(no commit message)

README.md

@@ -1,2 +1,138 @@
-# medcalc_bench-claude-3.7-sonnet-MIPROv2
+# Structured Prompting Enables More Robust Evaluation of Language Models
 
+[![arXiv](https://img.shields.io/badge/arXiv-2511.20836-b31b1b.svg?style=for-the-badge)](https://arxiv.org/abs/2511.20836)
+[![License](https://img.shields.io/github/license/stanfordmimi/helm-optimizer?style=for-the-badge)](LICENSE)
+
+<img src="assets/fig.png" alt="Overview" width="650">
+
+**Figure 1** | **Pipeline overview**. (a) DSPy takes HELM's baseline prompt and produces structured prompt variants. (b) HELM evaluates models under each prompt variant. With structured prompting, we observe more robust performance evaluation.
+
+## What is DSPy-HELM?
+
+A comprehensive framework for optimizing language model performance on benchmarks using [DSPy](https://github.com/stanfordnlp/dspy), enabling more robust evaluation. This toolkit allows automated prompt optimization (APO) for benchmarks from the [HELM](https://github.com/stanford-crfm/helm) (Holistic Evaluation of Language Models) ecosystem.
+
+## Installation
+
+```bash
+# Clone the repository
+git clone https://github.com/StanfordMIMI/dspy-helm.git
+cd dspy-helm
+
+# Install dependencies
+pip install -r requirements.txt
+```
+
+## Basic Usage
+
+**Configure settings** in `run.sh`:
+```bash
+scenarios=("mmlu_pro" "gpqa" "gsm8k" "medcalc_bench" "medec" "head_qa" "medbullets")
+optimizers=("MIPROv2" "BootstrapFewShotWithRandomSearch")
+
+# Language model to be optimized
+model=openai/gpt-4o
+api_base="your_api_base_here"
+api_key="your_api_key_here"
+
+# Teacher language model for proposing instruction candidates (MIPROv2)
+prompt_model=openai/gpt-4o
+prompt_api_base="your_api_base_here"
+prompt_api_key="your_api_key_here"
+
+max_bootstrapped_demos=3
+max_labeled_demos=3
+num_threads=1
+```
+
+**Run optimization**:
+```bash
+./run.sh
+```
+
+## 📊 Supported Benchmarks
+
+| Benchmark         | Input → Output                        | Task                   |
+|-------------------|--------------------------------------|------------------------|
+| MMLU-Pro          | Reasoning Question → Answer           | Multi-Task Reasoning   |
+| GPQA              | Graduate Question → Answer            | Graduate-Level QA      |
+| GSM8K             | Math Problem → Solution               | Numeric Problem-Solving|
+| MedCalc-Bench     | Patient Note → Computed Value         | Computational Reasoning|
+| Medec             | Medical Narrative → Errors            | Error Classification   |
+| HeadQA            | Medical Question → Answer             | USMLE-Style QA         |
+| MedBullets        | Medical Question → Answer             | USMLE-Style QA         |
+
+## Optimization Parameters
+
+- `--max_bootstrapped_demos`: Number of bootstrapped demonstrations
+- `--max_labeled_demos`: Number of labeled demonstrations
+- `--num_threads`: Parallel processing threads (default: 16)
+
+## 📁 Project Structure
+
+```
+dspy-helm/
+├── main.py              # Main optimization script
+├── scenarios.py         # Benchmark implementations
+├── run.sh               # Batch optimization runner
+├── requirements.txt     # Python dependencies
+├── agents/              # Optimized DSPy agents
+│   ├── medcalc_bench/
+│   ├── head_qa/
+│   ├── medbullets/
+│   └── ...
+└── README.md            # This file
+```
+
+## 📈 Results and Evaluation
+
+Optimized agents are automatically saved to the `agents/` directory:
+
+```
+agents/
+└── {scenario}/
+    └── {model_name}/
+        ├── MIPROv2.json
+        └── BootstrapFewShotWithRandomSearch.json
+```
+
+## Creating Custom Scenarios
+
+To add a new HELM benchmark:
+
+**Implement the scenario class** in `scenarios.py`:
+```python
+class my_benchmark:
+    def __init__(self, test_size=0.1, seed=42):
+        self.test_size = test_size
+        self.seed = seed
+    
+    @staticmethod
+    def make_prompt(row):
+        return f"Question: {row['question']}\nAnswer:"
+    
+    @staticmethod
+    def metric(example, pred, trace=None):
+        # Your evaluation metric
+        return dspy.evaluate.metrics.answer_exact_match(example, pred, trace)
+    
+    def load_data(self):
+        # Load and return trainset, valset
+        pass
+```
+
+## 🙏 Acknowledgments
+
+This repository is built using [DSPy](https://github.com/stanfordnlp/dspy) for prompt optimization.
+
+## 📎 Citation
+
+If you find this repository useful for your work, please cite the following paper:
+
+```bibtex
+@article{aali2025structured,
+  title={Structured Prompting Enables More Robust Evaluation of Language Models},
+  author={Aali, Asad and Mohsin, Muhammad Ahmed and Bikia, Vasiliki and Singhvi, Arnav and Gaus, Richard and Bedi, Suhana and Cui, Hejie and Fuentes, Miguel and Unell, Alyssa and Mai, Yifan and others},
+  journal={arXiv preprint arXiv:2511.20836},
+  year={2025}
+}
+```